Phylogenetic framework for coevolutionary studies: A compass for exploring jungles of tangled trees

Phylogenetics is used to detect past evolutionary events, from how species originated to how their ecological interactions with other species arose, which can mirror cophylogenetic patterns. Cophylogenetic reconstructions uncover past ecological relationships between taxa through inferred coevolutionary events on trees, for example, codivergence, duplication, host-switching, and loss. These events can be detected by cophylogenetic analyses based on nodes and the length and branching pattern of the phylogenetic trees of symbiotic associations, for example, host-parasite. In the past 2 decades, algorithms have been developed for cophylogetenic analyses and implemented in different software, for example, statistical congruence index and event-based methods. Based on the combination of these approaches, it is possible to integrate temporal information into cophylogenetical inference, such as estimates of lineage divergence times between 2 taxa, for example, hosts and parasites. Additionally, the advances in phylogenetic biogeography applying methods based on parametric process models and combined Bayesian approaches, can be useful for interpreting coevolutionary histories in a scenario of biogeographical area connectivity through time. This article briefly reviews the basics of parasitology and provides an overview of software packages in cophylogenetic methods. Thus, the objective here is to present a phylogenetic framework for coevolutionary studies, with special emphasis on groups of parasitic organisms. Researchers wishing to undertake phylogeny-based coevolutionary studies can use this review as a "compass" when "walking" through jungles of tangled phylogenetic trees.Facultad de Ciencias Naturales y Muse

Phylogenetic framework for coevolutionary studies: A compass for exploring jungles of tangled trees

Phylogenetics is used to detect past evolutionary events, from how species originated to how their ecological interactions with other species arose, which can mirror cophylogenetic patterns. Cophylogenetic reconstructions uncover past ecological relationships between taxa through inferred coevolutionary events on trees, for example, codivergence, duplication, host-switching, and loss. These events can be detected by cophylogenetic analyses based on nodes and the length and branching pattern of the phylogenetic trees of symbiotic associations, for example, host-parasite. In the past 2 decades, algorithms have been developed for cophylogetenic analyses and implemented in different software, for example, statistical congruence index and event-based methods. Based on the combination of these approaches, it is possible to integrate temporal information into cophylogenetical inference, such as estimates of lineage divergence times between 2 taxa, for example, hosts and parasites. Additionally, the advances in phylogenetic biogeography applying methods based on parametric process models and combined Bayesian approaches, can be useful for interpreting coevolutionary histories in a scenario of biogeographical area connectivity through time. This article briefly reviews the basics of parasitology and provides an overview of software packages in cophylogenetic methods. Thus, the objective here is to present a phylogenetic framework for coevolutionary studies, with special emphasis on groups of parasitic organisms. Researchers wishing to undertake phylogeny-based coevolutionary studies can use this review as a "compass" when "walking" through jungles of tangled phylogenetic trees.Facultad de Ciencias Naturales y Muse

Phylogenetic framework for coevolutionary studies: A compass for exploring jungles of tangled trees

Phylogenetics is used to detect past evolutionary events, from how species originated to how their ecological interactions with other species arose, which can mirror cophylogenetic patterns. Cophylogenetic reconstructions uncover past ecological relationships between taxa through inferred coevolutionary events on trees, for example, codivergence, duplication, host-switching, and loss. These events can be detected by cophylogenetic analyses based on nodes and the length and branching pattern of the phylogenetic trees of symbiotic associations, for example, host-parasite. In the past 2 decades, algorithms have been developed for cophylogetenic analyses and implemented in different software, for example, statistical congruence index and event-based methods. Based on the combination of these approaches, it is possible to integrate temporal information into cophylogenetical inference, such as estimates of lineage divergence times between 2 taxa, for example, hosts and parasites. Additionally, the advances in phylogenetic biogeography applying methods based on parametric process models and combined Bayesian approaches, can be useful for interpreting coevolutionary histories in a scenario of biogeographical area connectivity through time. This article briefly reviews the basics of parasitology and provides an overview of software packages in cophylogenetic methods. Thus, the objective here is to present a phylogenetic framework for coevolutionary studies, with special emphasis on groups of parasitic organisms. Researchers wishing to undertake phylogeny-based coevolutionary studies can use this review as a "compass" when "walking" through jungles of tangled phylogenetic trees.Facultad de Ciencias Naturales y Muse

Checklist of freshwater symbiotic temnocephalans (Platyhelminthes, Rhabditophora, Temnocephalida) from the Neotropics

Fil: Martínez-Aquino, Andrés. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. División Zoología Invertebrados; ArgentinaFil: Brusa, Francisco. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. División Zoología Invertebrados; ArgentinaFil: Damborenea, María Cristina. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. División Zoología Invertebrados; Argentin

Checklist of freshwater symbiotic temnocephalans (Platyhelminthes, Rhabditophora, Temnocephalida) from the Neotropics

Based on published records and original data derived from our research, we have generated a checklist of symbiotic temnocephalan fauna from 57 taxa of freshwater invertebrate and vertebrate hosts from 16 families included in four classes from the Neotropics. The checklist contains 38 nominal species from 3 genera belonging to the Temnocephalida families Diceratocephalidae, Didymorchidae and Temnocephalidae. All taxa (35) of the genus Temnocephala are endemic to the Neotropics and 14 (40%) are considered microendemic (i.e. only one record each from a single locality). While only one species and one variety of Didymorchis are known from the Neotropics; there are also two putative undescribed species of this genus. Only Diceratocephala boschmai (Diceratocephalidae) is reported as an introduced species from Uruguay. Host specificity to a particular group of invertebrates and vertebrates is the first evidence for the ecological and evolutionary associations that will be analyzed in future studies.Facultad de Ciencias Naturales y Muse

Checklist of freshwater symbiotic temnocephalans (Platyhelminthes, Rhabditophora, Temnocephalida) from the Neotropics

Based on published records and original data derived from our research, we have generated a checklist of symbiotic temnocephalan fauna from 57 taxa of freshwater invertebrate and vertebrate hosts from 16 families included in four classes from the Neotropics. The checklist contains 38 nominal species from 3 genera belonging to the Temnocephalida families Diceratocephalidae, Didymorchidae and Temnocephalidae. All taxa (35) of the genus Temnocephala are endemic to the Neotropics and 14 (40%) are considered microendemic (i.e. only one record each from a single locality). While only one species and one variety of Didymorchis are known from the Neotropics; there are also two putative undescribed species of this genus. Only Diceratocephala boschmai (Diceratocephalidae) is reported as an introduced species from Uruguay. Host specificity to a particular group of invertebrates and vertebrates is the first evidence for the ecological and evolutionary associations that will be analyzed in future studies.Facultad de Ciencias Naturales y Muse

Temporal Phase Synchrony Disruption in Dyslexia: Anomaly Patterns in Auditory Processing

The search for a dyslexia diagnosis based on exclusively objective methods is currently a challenging task. Usually, this disorder is analyzed by means of behavioral tests prone to errors due to their subjective nature; e.g. the subject’s mood while doing the test can affect the results. Understanding the brain processes involved is key to proportionate a correct analysis and avoid these types of problems. It is in this task, biomarkers like electroencephalograms can help to obtain an objective measurement of the brain behavior that can be used to perform several analyses and ultimately making a diagnosis, keeping the human interaction at minimum. In this work, we used recorded electroencephalograms of children with and without dyslexia while a sound stimulus is played. We aim to detect whether there are significant differences in adaptation when the same stimulus is applied at different times. Our results show that following this process, a machine learning pipeline can be built with AUC values up to 0.73.Spanish Government PGC2018-098813-BC32 PGC2018-098813-B-C31Junta de Andalucia UMA20-FEDERJA-086 P18-RT-1624European CommissionBioSiP research group TIC-251MCIN/AEI by "ESF Investing in your future" PRE2019-087350 MICINN "Juan de la Cierva -Incorporacion" FellowshipLeeduca research groupJunta de Andalucia Spanish Governmen

Do the Historical Biogeography and Evolutionary History of the Digenean Margotrema spp. across Central Mexico Mirror Those of Their Freshwater Fish Hosts (Goodeinae)?

Host-parasite systems provide an ideal platform to study evolution at different levels, including codivergence in a historical biogeography context. In this study we aim to describe biogeographic and codivergent patterns and associated processes of the Goodeinae freshwater fish and their digenean parasite (Margotrema spp.) over the last 6.5 Ma (million years), identifying the main factors (host and/or hydrogeomorphology) that influenced the evolution of Margotrema. We obtained a species tree for Margotrema spp. using DNA sequence data from mitochondrial and nuclear molecular markers (COI and ITS1, respectively) and performed molecular dating to discern divergence events within the genus. The dispersal-extinction-cladogenesis (DEC) model was used to describe the historical biogeography of digeneans and applied to cophylogenetic analyses of Margotrema and their goodeine hosts. Our results showed that the evolutionary history of Margotrema has been shaped in close association with its geographic context, especially with the geological history of central Mexico during the Pleistocene. Host-specificity has been established at three levels of historical association: a) Species-Species, represented by Xenotaenia resolanae -M. resolanae exclusively found in the Cuzalapa River Basin; b) Species-Lineage, represented by Characodon audax-M. bravoae Lineage II, exclusive to the Upper and Middle Mezquital River Basin, and c) Tribe-Lineage, including two instances of historical associations among parasites and hosts at the taxonomical level of tribe, one represented by Ilyodontini-M. bravoae Lineage I (distributed across the Ayuquila and Balsas River Basins), and another comprised of Girardinichthyini/Chapalichthyini-M. bravoae Lineage III, found only in the Lerma River Basin. We show that the evolutionary history of the parasites is, on several occasions, in agreement with the phylogenetic and biogeographic history of their hosts. A series of biogeographic and host-parasite events explain the codivergence patterns observed, in which cospeciation and colonisation via host-switching and vicariant plus dispersal events are appreciated, at different times during the diversification history of both associates, particularly during the Pleistocene.Facultad de Ciencias Naturales y Muse

Do the Historical Biogeography and Evolutionary History of the Digenean Margotrema spp. across Central Mexico Mirror Those of Their Freshwater Fish Hosts (Goodeinae)?

Host-parasite systems provide an ideal platform to study evolution at different levels, including codivergence in a historical biogeography context. In this study we aim to describe biogeographic and codivergent patterns and associated processes of the Goodeinae freshwater fish and their digenean parasite (Margotrema spp.) over the last 6.5 Ma (million years), identifying the main factors (host and/or hydrogeomorphology) that influenced the evolution of Margotrema. We obtained a species tree for Margotrema spp. using DNA sequence data from mitochondrial and nuclear molecular markers (COI and ITS1, respectively) and performed molecular dating to discern divergence events within the genus. The dispersal-extinction-cladogenesis (DEC) model was used to describe the historical biogeography of digeneans and applied to cophylogenetic analyses of Margotrema and their goodeine hosts. Our results showed that the evolutionary history of Margotrema has been shaped in close association with its geographic context, especially with the geological history of central Mexico during the Pleistocene. Host-specificity has been established at three levels of historical association: a) Species-Species, represented by Xenotaenia resolanae -M. resolanae exclusively found in the Cuzalapa River Basin; b) Species-Lineage, represented by Characodon audax-M. bravoae Lineage II, exclusive to the Upper and Middle Mezquital River Basin, and c) Tribe-Lineage, including two instances of historical associations among parasites and hosts at the taxonomical level of tribe, one represented by Ilyodontini-M. bravoae Lineage I (distributed across the Ayuquila and Balsas River Basins), and another comprised of Girardinichthyini/Chapalichthyini-M. bravoae Lineage III, found only in the Lerma River Basin. We show that the evolutionary history of the parasites is, on several occasions, in agreement with the phylogenetic and biogeographic history of their hosts. A series of biogeographic and host-parasite events explain the codivergence patterns observed, in which cospeciation and colonisation via host-switching and vicariant plus dispersal events are appreciated, at different times during the diversification history of both associates, particularly during the Pleistocene.Facultad de Ciencias Naturales y Muse